Patch Clusters Example
Model was written in NetLogo 5.0.4
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patches-own [ cluster ;; Holds a patch which is that cluster's "leader". ;; it's arbitrary which patch is used to identify ;; the cluster -- whichever one we happen to find ;; first will do. If this patch hasn't been assigned ;; to a cluster yet, then this holds "nobody". ] to setup clear-all ask patches [ ;; use dark colors so the labels are visible set pcolor 3 + 10 * random 14 ;; initially, we're in no cluster set cluster nobody ] ;; by spreading colors from patch to patch, connected areas ;; that are all the same color will emerge repeat 20 [ ask patches [ set pcolor [pcolor] of one-of neighbors4 ] ] end to find-clusters loop [ ;; pick a random patch that isn't in a cluster yet let seed one-of patches with [cluster = nobody] ;; if we can't find one, then we're done! if seed = nobody [ show-clusters stop ] ;; otherwise, make the patch the "leader" of a new cluster ;; by assigning itself to its own cluster, then call ;; grow-cluster to find the rest of the cluster ask seed [ set cluster self grow-cluster ] ] end to grow-cluster ;; patch procedure ask neighbors4 with [(cluster = nobody) and (pcolor = [pcolor] of myself)] [ set cluster [cluster] of myself grow-cluster ] end ;; once all the clusters have been found, this is called ;; to put numeric labels on them so the user can see ;; that the clusters were identified correctly to show-clusters let counter 0 loop [ ;; pick a random patch we haven't labeled yet let p one-of patches with [plabel = ""] if p = nobody [ stop ] ;; give all patches in the chosen patch's cluster ;; the same label ask p [ ask patches with [cluster = [cluster] of myself] [ set plabel counter ] ] set counter counter + 1 ] end ; Public Domain: ; To the extent possible under law, Uri Wilensky has waived all ; copyright and related or neighboring rights to this model.
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File | Type | Description | Last updated | |
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Patch Clusters Example.png | preview | Preview for 'Patch Clusters Example' | over 11 years ago, by Uri Wilensky | Download |
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Chris Dibble
Great - suggestions to run faster with larger grid? (Question)
Hi there, I've used this example to successfully identify "habitat" clusters in a simulated landscape. This is great, but I was wondering if anyone had suggestions for improving setup speed when the size of the world expands. Right now, the two loops take a long time to run (which makes sense) - is there an alternate route? Thanks! CD
Posted almost 12 years ago
Reuven M. Lerner
Faster startup time
Hi, Chris. The two loops you mentioned are (a) setting up the patches, and (b) repeatedly changing the patch colors based on neighbors' colors. There's no way to parallelize things in NetLogo, so the process of changing the colors is a slow one. You could potentially speed things up by reducing the number of loop iterations from 20 to something smaller. But that'll obviously mean that there is a less pronounced effect. At least, that's how it seems to me; someone else might have a better suggestion.
Posted almost 12 years ago